trunx package

Subpackages

• trunx.datasets namespace
  • Submodules
  • trunx.datasets.era5_icp_weather module
    • Unit conversions applied
    • build_icp_era5_mapping()
    • get_plot_weather()
    • prepare_era5_weather()
• trunx.gp3 namespace
  • Submodules
  • trunx.gp3.PG3_model_impl module
    • prepare_data()
    • run_threepg_main()
  • trunx.gp3.helper_function module
    • apply_self_thinning()
    • apply_self_thinning_with_mortality_factors()
    • apply_stress_mortality()
    • calculate_base_conductance()
    • calculate_day_length()
    • calculate_interception()
    • calculate_transpiration()
    • compute_allocation_fraction()
    • compute_asw()
    • compute_canopy_cover()
    • compute_dbh()
    • compute_lai()
    • compute_light_interception()
    • compute_litterfall_rate()
    • f_age()
    • f_calpha()
    • f_cg()
    • f_exp_foliage()
    • f_exp_wood()
    • f_frost()
    • f_nutrition()
    • f_soil_water()
    • f_temperature()
    • f_temperature_gc()
    • f_vpd()
    • is_dormant()
    • scale_transpiration()
    • update_soil_water()
  • trunx.gp3.model_inputs module
    • ClimateData
      • ClimateData.T_avg
      • ClimateData.T_max
      • ClimateData.VPD
      • ClimateData.co2
      • ClimateData.d13catm
      • ClimateData.frost_days
      • ClimateData.month
      • ClimateData.n_days
      • ClimateData.precip
      • ClimateData.solar_rad
    • Params
      • Params.BLcond
      • Params.CoeffCond
      • Params.D13CTissueDif
      • Params.LAIgcx
      • Params.LAImaxIntcptn
      • Params.MaxAge
      • Params.MaxCond
      • Params.MaxIntcptn
      • Params.MinCond
      • Params.Qa
      • Params.Qb
      • Params.RGcGw
      • Params.SLA0
      • Params.SLA1
      • Params.SWconst
      • Params.SWpower
      • Params.Tmax
      • Params.Tmin
      • Params.Topt
      • Params.Y
      • Params.aFracDiffu
      • Params.aH
      • Params.aHL
      • Params.aK
      • Params.aV
      • Params.aWS
      • Params.alphaCx
      • Params.bFracRubi
      • Params.cVPD
      • Params.crownshape
      • Params.fCalpha700
      • Params.fCg700
      • Params.fN0
      • Params.fNn
      • Params.fracBB0
      • Params.fracBB1
      • Params.fullCanAge
      • Params.gDM_mol
      • Params.gammaF0
      • Params.gammaF1
      • Params.gammaN0
      • Params.gammaN1
      • Params.gammaR
      • Params.k
      • Params.kF
      • Params.leaffall
      • Params.leafgrow
      • Params.m0
      • Params.mF
      • Params.mR
      • Params.mS
      • Params.molPAR_MJ
      • Params.nAge
      • Params.nHB
      • Params.nHC
      • Params.nHLB
      • Params.nHLC
      • Params.nHLL
      • Params.nHLrh
      • Params.nKB
      • Params.nKC
      • Params.nKH
      • Params.nKrh
      • Params.nVB
      • Params.nVBH
      • Params.nVH
      • Params.nWS
      • Params.ngammaN
      • Params.pFS2
      • Params.pFS20
      • Params.pRn
      • Params.pRx
      • Params.rAge
      • Params.rhoMax
      • Params.rhoMin
      • Params.tBB
      • Params.tRho
      • Params.tSLA
      • Params.tgammaF
      • Params.tgammaN
      • Params.thinPower
      • Params.wSx1000
    • SiteData
      • SiteData.ASW
      • SiteData.ASW_max
      • SiteData.ASW_min
      • SiteData.altitude
      • SiteData.latitude
      • SiteData.month_i
      • SiteData.soil_class
      • SiteData.year_i
    • SpeciesData
      • SpeciesData.FR
      • SpeciesData.N
      • SpeciesData.WF
      • SpeciesData.WR
      • SpeciesData.WS
      • SpeciesData.month_p
      • SpeciesData.specie
      • SpeciesData.year_p
    • State
      • State.ASW
      • State.N
      • State.WF
      • State.WF_debt
      • State.WR
      • State.WS
      • State.age
      • State.prev_month
  • trunx.gp3.plot_function module
    • create_comparison_dataframe()
    • plot_combined_3pg_outputs()
    • plot_combined_3pg_outputs_obv()
    • plot_combined_3pg_outputs_per_species()
    • plot_dbh_distribution()
    • plot_outputs()
    • plot_weather_data()
  • trunx.gp3.prepare_climate module
    • clim_range()
    • get_vpd()
    • prepare_climate()
  • trunx.gp3.prepare_site module
    • prepare_site()
  • trunx.gp3.prepare_species module
    • prepare_species()
  • trunx.gp3.run_3pg module
    • loss_fn()
    • model_step()
    • run_3pg()
    • ws_final()
    • ws_final_vector()
  • trunx.gp3.weather_processing module
    • aggregate_icp_monthly()
    • create_weather_input()
    • fill_weather_with_era5()
    • weather_summary()

Submodules

trunx.config module

Configuration variables for the project.

Used for centralizing paths definitions, among other things.

trunx.config.load_config(project_root)

Load project configuration file.

Module contents