Index

A

aFracDiffu (trunx.gp3.model_inputs.Params attribute) age (trunx.gp3.model_inputs.State attribute) aggregate_icp_monthly() (in module trunx.gp3.weather_processing) aH (trunx.gp3.model_inputs.Params attribute) aHL (trunx.gp3.model_inputs.Params attribute) aK (trunx.gp3.model_inputs.Params attribute) alphaCx (trunx.gp3.model_inputs.Params attribute) altitude (trunx.gp3.model_inputs.SiteData attribute)

apply_self_thinning() (in module trunx.gp3.helper_function) apply_self_thinning_with_mortality_factors() (in module trunx.gp3.helper_function) apply_stress_mortality() (in module trunx.gp3.helper_function) ASW (trunx.gp3.model_inputs.SiteData attribute) (trunx.gp3.model_inputs.State attribute) ASW_max (trunx.gp3.model_inputs.SiteData attribute) ASW_min (trunx.gp3.model_inputs.SiteData attribute) aV (trunx.gp3.model_inputs.Params attribute) aWS (trunx.gp3.model_inputs.Params attribute)

B

bFracRubi (trunx.gp3.model_inputs.Params attribute)

BLcond (trunx.gp3.model_inputs.Params attribute) build_icp_era5_mapping() (in module trunx.datasets.era5_icp_weather)

C

calculate_base_conductance() (in module trunx.gp3.helper_function) calculate_day_length() (in module trunx.gp3.helper_function) calculate_interception() (in module trunx.gp3.helper_function) calculate_transpiration() (in module trunx.gp3.helper_function) clim_range() (in module trunx.gp3.prepare_climate) ClimateData (class in trunx.gp3.model_inputs) co2 (trunx.gp3.model_inputs.ClimateData attribute) CoeffCond (trunx.gp3.model_inputs.Params attribute) compute_allocation_fraction() (in module trunx.gp3.helper_function)

compute_asw() (in module trunx.gp3.helper_function) compute_canopy_cover() (in module trunx.gp3.helper_function) compute_dbh() (in module trunx.gp3.helper_function) compute_lai() (in module trunx.gp3.helper_function) compute_light_interception() (in module trunx.gp3.helper_function) compute_litterfall_rate() (in module trunx.gp3.helper_function) create_comparison_dataframe() (in module trunx.gp3.plot_function) create_weather_input() (in module trunx.gp3.weather_processing) crownshape (trunx.gp3.model_inputs.Params attribute) cVPD (trunx.gp3.model_inputs.Params attribute)

D

d13catm (trunx.gp3.model_inputs.ClimateData attribute)

D13CTissueDif (trunx.gp3.model_inputs.Params attribute)

F

f_age() (in module trunx.gp3.helper_function) f_calpha() (in module trunx.gp3.helper_function) f_cg() (in module trunx.gp3.helper_function) f_exp_foliage() (in module trunx.gp3.helper_function) f_exp_wood() (in module trunx.gp3.helper_function) f_frost() (in module trunx.gp3.helper_function) f_nutrition() (in module trunx.gp3.helper_function) f_soil_water() (in module trunx.gp3.helper_function) f_temperature() (in module trunx.gp3.helper_function) f_temperature_gc() (in module trunx.gp3.helper_function)

f_vpd() (in module trunx.gp3.helper_function) fCalpha700 (trunx.gp3.model_inputs.Params attribute) fCg700 (trunx.gp3.model_inputs.Params attribute) fill_weather_with_era5() (in module trunx.gp3.weather_processing) fN0 (trunx.gp3.model_inputs.Params attribute) fNn (trunx.gp3.model_inputs.Params attribute) FR (trunx.gp3.model_inputs.SpeciesData attribute) fracBB0 (trunx.gp3.model_inputs.Params attribute) fracBB1 (trunx.gp3.model_inputs.Params attribute) frost_days (trunx.gp3.model_inputs.ClimateData attribute) fullCanAge (trunx.gp3.model_inputs.Params attribute)

G

gammaF0 (trunx.gp3.model_inputs.Params attribute) gammaF1 (trunx.gp3.model_inputs.Params attribute) gammaN0 (trunx.gp3.model_inputs.Params attribute) gammaN1 (trunx.gp3.model_inputs.Params attribute)

gammaR (trunx.gp3.model_inputs.Params attribute) gDM_mol (trunx.gp3.model_inputs.Params attribute) get_plot_weather() (in module trunx.datasets.era5_icp_weather) get_vpd() (in module trunx.gp3.prepare_climate)

I

is_dormant() (in module trunx.gp3.helper_function)

K

k (trunx.gp3.model_inputs.Params attribute)

kF (trunx.gp3.model_inputs.Params attribute)

L

LAIgcx (trunx.gp3.model_inputs.Params attribute) LAImaxIntcptn (trunx.gp3.model_inputs.Params attribute) latitude (trunx.gp3.model_inputs.SiteData attribute)

leaffall (trunx.gp3.model_inputs.Params attribute) leafgrow (trunx.gp3.model_inputs.Params attribute) load_config() (in module trunx.config) loss_fn() (in module trunx.gp3.run_3pg)

M

m0 (trunx.gp3.model_inputs.Params attribute) MaxAge (trunx.gp3.model_inputs.Params attribute) MaxCond (trunx.gp3.model_inputs.Params attribute) MaxIntcptn (trunx.gp3.model_inputs.Params attribute) mF (trunx.gp3.model_inputs.Params attribute) MinCond (trunx.gp3.model_inputs.Params attribute) model_step() (in module trunx.gp3.run_3pg) module trunx trunx.config trunx.datasets trunx.datasets.era5_icp_weather trunx.gp3 trunx.gp3.helper_function trunx.gp3.model_inputs trunx.gp3.PG3_model_impl trunx.gp3.plot_function trunx.gp3.prepare_climate trunx.gp3.prepare_site trunx.gp3.prepare_species trunx.gp3.run_3pg trunx.gp3.weather_processing

molPAR_MJ (trunx.gp3.model_inputs.Params attribute) month (trunx.gp3.model_inputs.ClimateData attribute) month_i (trunx.gp3.model_inputs.SiteData attribute) month_p (trunx.gp3.model_inputs.SpeciesData attribute) mR (trunx.gp3.model_inputs.Params attribute) mS (trunx.gp3.model_inputs.Params attribute)

N

N (trunx.gp3.model_inputs.SpeciesData attribute) (trunx.gp3.model_inputs.State attribute) n_days (trunx.gp3.model_inputs.ClimateData attribute) nAge (trunx.gp3.model_inputs.Params attribute) ngammaN (trunx.gp3.model_inputs.Params attribute) nHB (trunx.gp3.model_inputs.Params attribute) nHC (trunx.gp3.model_inputs.Params attribute) nHLB (trunx.gp3.model_inputs.Params attribute) nHLC (trunx.gp3.model_inputs.Params attribute)

nHLL (trunx.gp3.model_inputs.Params attribute) nHLrh (trunx.gp3.model_inputs.Params attribute) nKB (trunx.gp3.model_inputs.Params attribute) nKC (trunx.gp3.model_inputs.Params attribute) nKH (trunx.gp3.model_inputs.Params attribute) nKrh (trunx.gp3.model_inputs.Params attribute) nVB (trunx.gp3.model_inputs.Params attribute) nVBH (trunx.gp3.model_inputs.Params attribute) nVH (trunx.gp3.model_inputs.Params attribute) nWS (trunx.gp3.model_inputs.Params attribute)

P

Params (class in trunx.gp3.model_inputs) pFS2 (trunx.gp3.model_inputs.Params attribute) pFS20 (trunx.gp3.model_inputs.Params attribute) plot_combined_3pg_outputs() (in module trunx.gp3.plot_function) plot_combined_3pg_outputs_obv() (in module trunx.gp3.plot_function) plot_combined_3pg_outputs_per_species() (in module trunx.gp3.plot_function) plot_dbh_distribution() (in module trunx.gp3.plot_function) plot_outputs() (in module trunx.gp3.plot_function) plot_weather_data() (in module trunx.gp3.plot_function)

precip (trunx.gp3.model_inputs.ClimateData attribute) prepare_climate() (in module trunx.gp3.prepare_climate) prepare_data() (in module trunx.gp3.PG3_model_impl) prepare_era5_weather() (in module trunx.datasets.era5_icp_weather) prepare_site() (in module trunx.gp3.prepare_site) prepare_species() (in module trunx.gp3.prepare_species) prev_month (trunx.gp3.model_inputs.State attribute) pRn (trunx.gp3.model_inputs.Params attribute) pRx (trunx.gp3.model_inputs.Params attribute)

Q

Qa (trunx.gp3.model_inputs.Params attribute)

Qb (trunx.gp3.model_inputs.Params attribute)

R

rAge (trunx.gp3.model_inputs.Params attribute) RGcGw (trunx.gp3.model_inputs.Params attribute) rhoMax (trunx.gp3.model_inputs.Params attribute)

rhoMin (trunx.gp3.model_inputs.Params attribute) run_3pg() (in module trunx.gp3.run_3pg) run_threepg_main() (in module trunx.gp3.PG3_model_impl)

S

scale_transpiration() (in module trunx.gp3.helper_function) SiteData (class in trunx.gp3.model_inputs) SLA0 (trunx.gp3.model_inputs.Params attribute) SLA1 (trunx.gp3.model_inputs.Params attribute) soil_class (trunx.gp3.model_inputs.SiteData attribute)

solar_rad (trunx.gp3.model_inputs.ClimateData attribute) specie (trunx.gp3.model_inputs.SpeciesData attribute) SpeciesData (class in trunx.gp3.model_inputs) State (class in trunx.gp3.model_inputs) SWconst (trunx.gp3.model_inputs.Params attribute) SWpower (trunx.gp3.model_inputs.Params attribute)

T

T_avg (trunx.gp3.model_inputs.ClimateData attribute) T_max (trunx.gp3.model_inputs.ClimateData attribute) tBB (trunx.gp3.model_inputs.Params attribute) tgammaF (trunx.gp3.model_inputs.Params attribute) tgammaN (trunx.gp3.model_inputs.Params attribute) thinPower (trunx.gp3.model_inputs.Params attribute) Tmax (trunx.gp3.model_inputs.Params attribute) Tmin (trunx.gp3.model_inputs.Params attribute) Topt (trunx.gp3.model_inputs.Params attribute) tRho (trunx.gp3.model_inputs.Params attribute) trunx module trunx.config module trunx.datasets module trunx.datasets.era5_icp_weather module trunx.gp3 module

trunx.gp3.helper_function module trunx.gp3.model_inputs module trunx.gp3.PG3_model_impl module trunx.gp3.plot_function module trunx.gp3.prepare_climate module trunx.gp3.prepare_site module trunx.gp3.prepare_species module trunx.gp3.run_3pg module trunx.gp3.weather_processing module tSLA (trunx.gp3.model_inputs.Params attribute)

U

update_soil_water() (in module trunx.gp3.helper_function)

V

VPD (trunx.gp3.model_inputs.ClimateData attribute)

W

weather_summary() (in module trunx.gp3.weather_processing) WF (trunx.gp3.model_inputs.SpeciesData attribute) (trunx.gp3.model_inputs.State attribute) WF_debt (trunx.gp3.model_inputs.State attribute) WR (trunx.gp3.model_inputs.SpeciesData attribute) (trunx.gp3.model_inputs.State attribute)

WS (trunx.gp3.model_inputs.SpeciesData attribute) (trunx.gp3.model_inputs.State attribute) ws_final() (in module trunx.gp3.run_3pg) ws_final_vector() (in module trunx.gp3.run_3pg) wSx1000 (trunx.gp3.model_inputs.Params attribute)

Y

Y (trunx.gp3.model_inputs.Params attribute)

year_i (trunx.gp3.model_inputs.SiteData attribute) year_p (trunx.gp3.model_inputs.SpeciesData attribute)